Welcome to CyVerse!
International Plant and Animal Genomics XXV
Presenters:
- Kapeel Chougule: kchougul@cshl.edu
- Jason Williams: williams@cshl.edu / Twitter: @JasonWilliamsNY
CyVerse Vision: Transforming science through data-driven discovery.
CyVerse Mission: Design, deploy, and expand a national cyberinfrastructure for life sciences research and train scientists in its use.
CyVerse provides life scientists with powerful computational infrastructure to handle huge datasets and complex analyses, thus enabling data-driven discovery. Our powerful extensible platforms provide data storage, bioinformatics tools, image analyses, cloud services, APIs, and more.
CyVerse is of, by, and for the community, and community-driven needs shape our mission. We rely on your feedback to provide the infrastructure you need most to advance your science, development, and educational agenda.
While originally created with the name iPlant Collaborative to serve U.S. plant science communities, CyVerse cyberinfrastructure is germane to all life sciences disciplines and works equally well on data from plants, animals, or microbes. By democratizing access to supercomputing capabilities, we provide a crucial resource to enable scientists to find solutions for the future.
Workshop Agenda
Please take our user survey: Survey
In this workshop we will cover brief tutorials and documentation that will get you started using CyVerse tools and services right away.
- Account creation and setup
- Importing data into CyVerse
- Analyzing data with Discovery Enviornment
- Using Atmosphere cloud computing
- Importing data into Atmosphere
- Cloud computing extras
- Image analysis with BISQUE
- Understanding CyVerse help resources and policies
Resource Downloads
Topic | Resource |
---|---|
Workshop Slides | slides |
Genomics Workflows | brochure |
Utilities/software
- Cyberduck Download Utility - Link
- Cyberduck profile - Link
- iCommands (mac; tested fro Mac OS 10.9 - 10.11) - Link
- iCommands (linux; scroll down to iCommands CLI) - iRODS Download Page
- VNC viewer - Link
- PuTTY (windows)- Link
Funding and Citations
CyVerse is funded entirely by the National Science Foundation under Award Numbers DBI-0735191 and DBI-1265383.
Please cite CyVerse appropriately when you make use of our resources, CyVerse citation policy